Scaffold Ga0137363

Basic Information
Taxon OID	3300012202 Open in IMG/M
Scaffold ID	Ga0137363_10024340 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012202 Open in IMG/M

Scaffold ID

Ga0137363_10024340 Open in IMG/M

Source Dataset Name

Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4108
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4108

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002138	Metagenome / Metatranscriptome	590	Y
F002657	Metagenome / Metatranscriptome	539	Y
F026992	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137363_100243401	F002657	N/A	PTMRPSSARPVTSFLAVALLLSPSSFAFDTPLSDQAVREAYFLGQRRDETMATFLNKYTKFFPPPKTGPDIASVTFFTPFALLVQQSSQHTSGYSAQQAALDHRARGEFVRIVVRIQLTDSYGPFIARPTGSRSGSPAGLAPRPYDFWKDFDVQVSSEDQMLKPFSSSGQPNFICSEDGGCTLTGATLQFDFSVEDFASGSATVDVVPPKGDPVSLDFDLDHLR*
Ga0137363_100243402	F026992	GGA	MRHLFRVFASFLVALCVTLPASALDTPLSDEAVREAYFLGQRHDASFLTSYIKFLPMPKTGPHISSVTFLTPFAQLTQFSSKYVGNYSAQQARLDHRGQNESVKITVEIYLTNSYGALIANPVASPPRSPALIPRPNDFWKDFRIQVYNGRQILSPSDSGGRPLYRCGRYGPCRPRGAAVDLEFPAVAFTSDFVTVQVIPPEGDPVSVDFDLTRLR*
Ga0137363_100243405	F002138	GAGG	VTLREFFFENFAGDLEYHPRRAVLYLGLAVAALCFWIFSPQEAKFSALPLVFVLGSVTLLVKGIFLLRKSSEGLGLTPSELADLSDPSNRKTLPSVPNQAAQIVQDFGAGSLLLWPLLNVGQDIDHSWSNPPRVPVFLSGAILFFLGWLIRRLTSTPPGHH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137363_10024340

Overview

Ecosystem & Geography

Associated Families

Sequences