Basic Information | |
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Taxon OID | 3300012202 Open in IMG/M |
Scaffold ID | Ga0137363_10113923 Open in IMG/M |
Source Dataset Name | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2075 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 39.7291 | Long. (o) | -123.6419 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008511 | Metagenome / Metatranscriptome | 332 | Y |
F016091 | Metagenome / Metatranscriptome | 250 | Y |
F040251 | Metagenome | 162 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0137363_101139232 | F016091 | N/A | MLWSILIDDAFADWMSIKWLLWICLYLVMGVLVPWATALSWAYQHGSELRPRPRQLFQRGELGLIGLVVVISVIWNLLQSQFMPQTIAVAAVLLAVIGTMAGDVWIEDYCRQSTGTACNPERTWRDSRNLAFLVFSMALVVEVLLDRFAKAAAL* |
Ga0137363_101139233 | F008511 | AGGCGG | VNAPAPALAKPQRARVIVRLADAAVTVASLSLIFGLLLIFFPVSFPRIIVTSWQRGYLVLVMMALTLVLDTFLYLRVAYLRSSKPTVLVAACLGSLPIIVVGGLSFLLESAVTQTLSLDLPNLQARVNEEILAHTYLGLVSAVFLPFLAIRLLQQFRPTS* |
Ga0137363_101139235 | F040251 | N/A | FHTRSGAIRGMAEMLNPTRKYQSACLQPFRFIALGDDDHRKLRMALDSALDRRFLDPASEQLRTPLGF* |
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