NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137363_10273423

Scaffold Ga0137363_10273423


Overview

Basic Information
Taxon OID3300012202 Open in IMG/M
Scaffold IDGa0137363_10273423 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1379
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000127Metagenome / Metatranscriptome2019Y
F069245Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0137363_102734232F000127GAGMALLKEACNMFDETGCVPGIDGEQVPAERIVPDVKAYISETIDDPETMYDPEIWDTPGFALVLSWLAQKWSRKCHKLAPRGSKNPEQYLTKEQQKACLDSAAAELIREIKHKQSLN*
Ga0137363_102734234F069245N/AMKSVIRECVLVLTAVAVLEESALARNYLNCLSKKVVIVDAPKGTTSSSTEEHFGFWIDEATNIVTLADGKKLNVRRFDDGWISAVSGDVSYELDRQ
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