Scaffold Ga0137399

Basic Information
Taxon OID	3300012203 Open in IMG/M
Scaffold ID	Ga0137399_10043291 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012203 Open in IMG/M

Scaffold ID

Ga0137399_10043291 Open in IMG/M

Source Dataset Name

Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3216
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3216

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001571	Metagenome / Metatranscriptome	669	Y
F011479	Metagenome / Metatranscriptome	290	Y
F017116	Metagenome	242	Y
F020766	Metagenome / Metatranscriptome	222	Y
F034511	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137399_100432912	F011479	AGG	MSAVSFDDLVSQSVSETMSKILGATTWKSVNFFFDTKTAAREPEAFAALLDKVFGSASKVLQKKIAETLLNKVGAVQPSNTLDFRQILRLAKAKFPRTILPGQIG*
Ga0137399_100432913	F017116	GGA	MASDPIVALFEIFNLVLILIAFAIFTRLAFKGKSLGNFRFQLSIFLLIWIISEIPHLAESIGFLAATGYEETGLYLHAASMAVFAIFVGWRSLRFLSFHPPVPTTTVSLPTDTPKVLKS*
Ga0137399_100432914	F020766	AGG	LDLVTGGIALFTIMVAAGVVPLIMALKVKVHSLRILSLLLGLFAVVHGFYHLAFGFQQELLADAVFEPISLVLLIGLGVYYSRVGISIDGK*
Ga0137399_100432915	F001571	N/A	LTSSLRERKLALIHRVIVPDKEYPKEYAILVTDSRSIFIRLEKTRSSYWLRGEMKFGTALMTDVIPKTLEDYEHISLESLAADSASLTVVHERVTSLVLKKEEPEFRAREFFVWLTMRRQGHRFQVYNFEMNYRQGSDTATLIKFYLVPLGAYFKPRRQTQTRQAILLEYAMDALGVFQRVLSAKIVSS*
Ga0137399_100432916	F034511	AGG	VQAVFTPSTNWRGRAQLALGLVAITAGTVSWIYTTRALGGFGLGNLIPWNESVSGVLLPISIPLLIAGVGLCTYFLAMRRTWRASNRIESALCELEALVGQKNGVSGSALGVGVIPEAKKGGKRSFHLPSFNLGSKALAIALAEAVLLIIIYGGLVREYVANVNMQNWIRSNFAPGSYLLNYNAVLVIAGLLGVLIFQLLPRKLQSRKLEA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137399_10043291

Overview

Ecosystem & Geography

Associated Families

Sequences