NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137374_10035277

Scaffold Ga0137374_10035277


Overview

Basic Information
Taxon OID3300012204 Open in IMG/M
Scaffold IDGa0137374_10035277 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5386
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043312Metagenome / Metatranscriptome156N
F045037Metagenome153Y
F069956Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0137374_100352774F043312AGGAMRTPNLTLIHETVSLCFDQVLGTLGDRTKRIIYEFLSRRGIGKEEVSSRFEDVEGLLVELYGQGGRSVMIGTLAKLCEEYSIPLNLSYSDSLGNRMAQLTENILMQKLVPRHFRKDVDTRMFEDKTGSLAGWSD*
Ga0137374_100352775F069956GGAVFDSAIQTSLTNTLRSLGEDSLASVVSLLGRGNDVGNSLVARLAEVDAVLDELFAKFSNIIKHITILEACSHLKLDPPKLGNSLFWMVEELRSNMWKART*
Ga0137374_100352777F045037N/AMSVKERSKTLPPKLRRISDGIDDAIQEAKKIRELTIQEEVLLELDKVHATLEEARKQISKIMQS*
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