NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137362_10005306

Scaffold Ga0137362_10005306


Overview

Basic Information
Taxon OID3300012205 Open in IMG/M
Scaffold IDGa0137362_10005306 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8873
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000628Metagenome / Metatranscriptome973Y
F030116Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0137362_100053064F000628GGAMLVRPVAIRRNVGFDVFNVRLLIGLDKLLRAKRRYQGDLSASINDALLAVNLNTVKLVALQGKKKQTARETQVVILRRLIRRLHRIAKARDCSINQLVNSGLMAHYSKERRDKLEGSSRPTRQSTRAAYDRMSAAERQQLFEALGTLTGLQEGPTGKFSDGSYFEYDRALETTVEVRRSGERFPVTLVGGKFHRQTETAVAHKTAR*
Ga0137362_100053065F030116GGAGGMRKRRIERNLAFPTEEVRTRVRRAAQQRGFRTEQAFILAACENELNRDDSTEATTQIEDRMVASLGKVAKEFQSLFTLAHTQFALTNSLLQYMLTCMIEPPDEILPAARAGEA*
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