NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137380_10092405

Scaffold Ga0137380_10092405


Overview

Basic Information
Taxon OID3300012206 Open in IMG/M
Scaffold IDGa0137380_10092405 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2765
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000696Metagenome / Metatranscriptome931Y
F000739Metagenome / Metatranscriptome913Y
F006125Metagenome / Metatranscriptome381Y
F018044Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0137380_100924051F006125AGGAGMPITITLQPNNLDGSGSNFFYDIATLTFSGNYPTGGDTLDFTTVADKLPSTQIIQVFADSQNGNAGYYVPIAGSALNNWKLKAF
Ga0137380_100924054F000696AGGAMPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDTVLLPYANSAYRKVQRALGNAGAGGFIQDDVLLVVTAVTLADTSLQVSITDATAPPNQLPTDLLVPVKIWERPNGSTDDFLEMVDLTQHGGLPSRVQDVTLSVWEWRADGIYFLGATQDTQIRLRYLKAYPDFTDATSPVLVRNSQEAIAYATAALAAWARGSPLAAKWDDAASDAIEDLVSAVVRREQQSARRRRPFSARSGYTPF
Ga0137380_100924055F000739GAGMNLTRIEIWLKGVLAAAISGGAGGVLTGFAAVGIDPQHFNLQAGMGATLRIAAAAALINAVIGVAAYLQKSPLPQE*
Ga0137380_100924056F018044N/ASRGEYEHCFTLEGPHGEFIQLTPTVAEHVAHAIERSRTFPRASSRARLYERERRAERNYEQWAYDLLDDTVPALHKQPSVTVL*
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