NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137379_10297948

Scaffold Ga0137379_10297948


Overview

Basic Information
Taxon OID3300012209 Open in IMG/M
Scaffold IDGa0137379_10297948 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1523
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022377Metagenome / Metatranscriptome214Y
F025865Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0137379_102979481F022377GGAGGMGTRTNIVAVLGQAAVIALLASLGTACLPCDDATGPRCGFQPHQPPPTQVTYYRTNFNDGTTGPLDVYAYGGGSCTKSTDYADRGSAYSMKCTVPAGTGAAALQAWFGQGRLSTLPKDPSLDRDLFEEVRFVFGPGAAGAVGGTSCDTTKNTNSQFKVHKSVYGQAGSAWNGWAMSQIGPCSDGNIGLFSEPEMWNVNGHTYPWPGTYPSLHEGSVYDVVYRYHRYTAMNCGTIAIWVNGMKVIDSPCWTYMGTTNGSAAG
Ga0137379_102979482F025865N/ADQDLFEEVRFVLGPGAANAIGGTTCTTQGTSAQFKVHKSVYGQSGSAWNGWVMSEIAPCSDGNIGLFSEPEMWNLNGQEFPWTGTYPSLHEGSVHDVVYRYHRYTAQGCGTIAIWVNGAKVMDSPCWSYMGTTNGSAQGLLFWDGATYLASGLGSLVVYNLLAQATNYPIGAGTASR*
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