NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137378_10195363

Scaffold Ga0137378_10195363


Overview

Basic Information
Taxon OID3300012210 Open in IMG/M
Scaffold IDGa0137378_10195363 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1883
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000823Metagenome / Metatranscriptome875Y
F000825Metagenome / Metatranscriptome874Y

Sequences

Protein IDFamilyRBSSequence
Ga0137378_101953632F000825GGAGGMRATQLLISAGMAFSVMTAPANAAWHSYISHQLGFSFEAPGEVKTTVGTYRGSAAGPKQTIVYRSVDDNIEYKVTVIPSFRQAQAEGANILGEREYMFQNDKKVLMDTFGRVEPGKDSIYGRKMTVELPKNAGRETAAFYFVNGNLITLEATVLPANGDFTSPDPGRFIDSIAFVLSRTQPGATELQVPEVE*
Ga0137378_101953633F000823GGAGGMRVLTLTALAGAAFMAAMAPAAAAWKGYISHPLGFAFAAPGELKVEKGTYQAAVGGKHDTIVFRSVDDNIEYKAIVIDMTAEANKAATIMGEAEYIFQDRKKVLMDTFGRVDGKFGRKLTIDLPNNGGRTTAAFYFVNGRIVSLQATVLPANGDYDTPEMGRFIDSITFYTVRAANDATELTVPK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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