NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0150985_116410254

Scaffold Ga0150985_116410254


Overview

Basic Information
Taxon OID3300012212 Open in IMG/M
Scaffold IDGa0150985_116410254 Open in IMG/M
Source Dataset NameCombined assembly of Hopland grassland soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1383
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → unclassified Gemmataceae → Gemmataceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa

Source Dataset Sampling Location
Location NameHopland, California, USA
CoordinatesLat. (o)38.972988Long. (o)-123.116539Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024750Metagenome / Metatranscriptome204Y
F067563Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0150985_1164102541F067563N/AQVLAGDEVAGSWRNRLQYMAPWPDQLCPHSHCLQPIRDLLVEMVPNVDQARPEFKALINQSPGGAITCPYCQGAVEYKSDGETLTVSARAPFRYSKVKMYLRAEDYGNQKSPPVSGMTPEQWIAEEKLMPNSLQGYWYAEDFSP*
Ga0150985_1164102542F024750GGAGGMKLTETELEYLSSWSREEWETECYKLPAHRLQLAHGASGESIIAFIKAWTKSERKKDQEILHAAANPDPIWPWSTTDEFQRRLEEARQVQSLHESPAA*
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