NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0150985_123071369

Scaffold Ga0150985_123071369


Overview

Basic Information
Taxon OID3300012212 Open in IMG/M
Scaffold IDGa0150985_123071369 Open in IMG/M
Source Dataset NameCombined assembly of Hopland grassland soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)924
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa

Source Dataset Sampling Location
Location NameHopland, California, USA
CoordinatesLat. (o)38.972988Long. (o)-123.116539Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015937Metagenome / Metatranscriptome251Y
F030161Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0150985_1230713691F015937N/ATYRADVAGANDTLTYRFFDDNIEYKAVVVDTRAKENDAANLLGEAQYLFKDGKKVLMDTYGRLDRQYGRKLTIDLPNNGGRASAAFYFVNGRMVWLQATVLPANGDYGTPDMARFVDSITFYTVRAPDDAIELPPPPK*
Ga0150985_1230713692F030161GGAGGMRKWISAAMAGAALTMLAMPAQAAWKNYVNKEIGFAFAAPGDVKPDIGNFRGNIAGPRQTIQYKSAENGIDYRVTVISFIQAQAEGATLLGEREYMFTDRKKVISDDFSKVGSGKDAVYGRKIVVELADNKGRTTSAFYFTKGRLI
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