Scaffold Ga0136564_1016836

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136564_1016836

Scaffold Ga0136564_1016836

Overview

Basic Information
Taxon OID	3300012263 Open in IMG/M
Scaffold ID	Ga0136564_1016836 Open in IMG/M
Source Dataset Name	Saline lake microbial communities from Club lake, Antarctica - Metagenome #318
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	899
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Club lake
Coordinates	Lat. (^o)	-68.5417	Long. (^o)	78.2467	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F069498	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136564_10168361	F069498	N/A	ENDPWDTMFGKPDDEPEPTPEQGGMSLEQLMGGDE*

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