NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126329_10387363

Scaffold Ga0126329_10387363


Overview

Basic Information
Taxon OID3300012273 Open in IMG/M
Scaffold IDGa0126329_10387363 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 2 OAHU.JWI-85 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)576
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Candidatus Nephrothrix → unclassified Candidatus Nephrothrix → Candidatus Nephrothrix sp. EaCA(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameHawaii, USA
CoordinatesLat. (o)21.3935Long. (o)-157.7156Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001058Metagenome790Y
F003194Metagenome501Y
F076708Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0126329_103873631F003194GAGGMTKSSGPRTEPWGTPQEDVYQEDRSVPHLTRKQRDDRYDLNQLRTKPWIPDQDERRVIKMSWSIVSKAAERSSRQRHDTFCDPIALM
Ga0126329_103873632F076708GAGVSRKEAKKELSVICVEVMVQGTRGNEGTERGGVHDEE*
Ga0126329_103873633F001058N/AMTENLLTLNTSKTEFLLIGLSKQLAKINNSSLTTTHSARNLGFIFDEHLTFSD
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