NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0116696_1136047

Scaffold Ga0116696_1136047


Overview

Basic Information
Taxon OID3300012284 Open in IMG/M
Scaffold IDGa0116696_1136047 Open in IMG/M
Source Dataset NameBeach sand microbial communities from Municipal Pensacola Beach, Florida - OS-S2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)518
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Beach Sand → Beach Sand Microbial Communities From Municipal Pensacola Beach, Florida

Source Dataset Sampling Location
Location NameUSA: Municipal Pensacola Beach, FL
CoordinatesLat. (o)30.3262Long. (o)-87.1745Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050381Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0116696_11360471F050381AGGAGMKKLILILAIVLLPAIALANFSIKFDNTTNKKMFYLLYWIDHTYDWPHPFNLAGGELKASEKVDLNVSLTNGHYYVVWHDDGDWKNEVMMDVKDNIKSVTVTPIKSSMQK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.