Scaffold Ga0157139_1000061

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157139_1000061

Scaffold Ga0157139_1000061

Overview

Basic Information
Taxon OID	3300012345 Open in IMG/M
Scaffold ID	Ga0157139_1000061 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Burnt River, Ontario, Canada - S22
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3739
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Kawartha Lakes, Ontario
Coordinates	Lat. (^o)	44.74057	Long. (^o)	-78.6591	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020365	Metagenome / Metatranscriptome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157139_10000615	F020365	N/A	MNFFNNFGKREALIYIIVSLWVGMGLLGAFKEASFTDLSIYFGSLTAYAATYIWAESKRPSKKSAIYKPGPNSRKEVMIYVIVILWAIAGCGAIWFKANLGELALYFVSLTGFVASWIAGEVYTPQDKINKNIED*

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