Scaffold Ga0157141_1005261

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157141_1005261

Scaffold Ga0157141_1005261

Overview

Basic Information
Taxon OID	3300012346 Open in IMG/M
Scaffold ID	Ga0157141_1005261 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Emily Creek, Ontario, Canada - S29
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2090
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Kawartha Lake, Ontario
Coordinates	Lat. (^o)	44.46181	Long. (^o)	-78.6228	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037052	Metagenome	168	Y
F053035	Metagenome / Metatranscriptome	141	Y
F083731	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157141_10052612	F037052	AGGTGG	VATKKLVNKFEPKMCDTIIAMGKEGASQKMMWSQLGISKSTAEAWKKKYPDFAEALEIALVHAQSYWETQLLANVDNKNFNSPLVEIALRGQFQQDYRETKDTKIDLKAEVKIDFQKEINDLIAALKI*
Ga0157141_10052614	F053035	AGGAG	MVSPFELRFSIFNTAKDLLVKQHEANLAAWEVLNKTSKEAADLAPKFPTTEEIIDKAIEINTFISGNTTKELANIAKKLSGVSVIF*
Ga0157141_10052615	F083731	AGG	MNLKQLLKHAGISNNIINEVEKKAAKTTAQMEQEHQEKALAMTKMMLNDALRYRKEHGGDKAQAEQMRSIIIPDEK*

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