NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157142_1001005

Scaffold Ga0157142_1001005


Overview

Basic Information
Taxon OID3300012347 Open in IMG/M
Scaffold IDGa0157142_1001005 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Fish Creek, Ontario, Canada - S48
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7461
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameGranton, Ontario
CoordinatesLat. (o)43.2206Long. (o)-81.2368Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F015600Metagenome / Metatranscriptome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0157142_100100512F000450AGGCGGMGDRANFGFVQSNGETIVLYGHWAGHNMLGRLADAVIAARPRWTDESYATRIAISQLIGDQWNMETGWGLAVNSILDNEHKIPIIDWNQQTFSLHEEADFRDETNKIRGMKNEAIFVMDLSTFCEKYALDNILVN*
Ga0157142_100100517F015600AGGAMEPISDKLPEHLQRMIDAGESGTDILHGELKNLMLEAEQEFTEIATEEEEDGYSDAMLSMERTRAEGRLDALVEIYNLTYQLAFAISERRANATV*
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