NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157140_10000002

Scaffold Ga0157140_10000002


Overview

Basic Information
Taxon OID3300012348 Open in IMG/M
Scaffold IDGa0157140_10000002 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Coldwater Creek, Ontario, Canada - S44
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)105101
Total Scaffold Genes127 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (14.96%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameColdwater, Ontario
CoordinatesLat. (o)44.58751Long. (o)-79.6655Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006215Metagenome / Metatranscriptome378Y
F023065Metagenome / Metatranscriptome211Y
F023114Metagenome / Metatranscriptome211Y
F036563Metagenome / Metatranscriptome169Y
F071027Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0157140_10000002111F023114N/AMREFIRTMFSNAEGTSHKRVLGTIGFISLVVLLFIADENHKDEVISAVEYMTIATVFGTVVEKFTNRK*
Ga0157140_1000000267F071027N/AMKLPIDFEQFKSDPSKAIMFLLLVVVSVLYYRTESQSKSINDRCEKRLLECEAKLEKLSKQLKTQDSLCSALVTEITLYKKLGKI*
Ga0157140_1000000268F006215N/AMQGYKYNTEAEAIASRQQCDAYYGIPASPTDVTQHWVDYNFAELNNPQFWYIAFDESLLPILGEPTEFEVIQPNPFDETN*
Ga0157140_1000000291F023065N/AMVSNADLISRLKNANKFLADDDLISDRYLYSLLKQKASVLIKREGNQRKLLTSDNLYQNYECVDLVLVNGTECDLNCPVRRTRKKLPKIEEGLYSYFIQGVFNPSNSVEIHPTSIRDYINHSQLRIKSPKKFYTIKDSYLYVLDPDVERINIYAYFTESIEDIDGVNCVSMYDKEFKIPAYLIDPLVELCNQSLINYHKLAPEEQDNNRDEQL*
Ga0157140_1000000294F036563N/AMNVQRNLEVLTAKDCAYLSVLDTSFYPSPIDSANLTIAVPGYSTPFEFEFILGEVNIFNSYSFGFTTSSTSDFAPLPDGVYTLNLTTCPDTGECKRYHLRTCKINCRLAEQWAQYVDCCDDEKTLQDLDRIEFLLKGAEAHADLCNPNKATELYIKADDLLRRIEGLC*
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