NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157140_10000038

Scaffold Ga0157140_10000038


Overview

Basic Information
Taxon OID3300012348 Open in IMG/M
Scaffold IDGa0157140_10000038 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Coldwater Creek, Ontario, Canada - S44
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28380
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (31.25%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (35.71%)
Associated Families14

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameColdwater, Ontario
CoordinatesLat. (o)44.58751Long. (o)-79.6655Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000957Metagenome / Metatranscriptome821Y
F001055Metagenome / Metatranscriptome791Y
F001338Metagenome / Metatranscriptome719Y
F001780Metagenome / Metatranscriptome635Y
F002038Metagenome / Metatranscriptome600Y
F003583Metagenome / Metatranscriptome478Y
F004790Metagenome / Metatranscriptome423Y
F006659Metagenome / Metatranscriptome367Y
F007416Metagenome / Metatranscriptome351Y
F014261Metagenome264Y
F016960Metagenome / Metatranscriptome243Y
F021297Metagenome / Metatranscriptome219Y
F026860Metagenome196Y
F042341Metagenome / Metatranscriptome158N

Sequences

Protein IDFamilyRBSSequence
Ga0157140_100000381F001780N/AVTKASINDLSAPAKEAKSFDAWFFSQPKKVQEKMRENGVLPYREMSQPRHVFSVDANHPAWSTKDGDNLRKETEAFISRDHVGVMLKGFIDALAATDNFAFRRHVETVRWALSLPGCLDSRTIGKMYGRSHFWMRSRAKEIQRAVNSDAVGMFPHVNARRDKHKQARPRPTPQNP*
Ga0157140_1000003812F002038N/AMDRTHATPKGILTIAKTVPGQYALLLFLDGFPYVELTSRKHADYLTELNAWKRKTYPSLARSEVRFFTLAPSGEIKELAFTPFRQ*
Ga0157140_1000003816F006659N/AMKKDPKLPADYRIIADSSYIVLPDQKVARLLTPTVRNGVTYYNLFVPGYTRMSLADIEATIKAGEVAKAEQPAK*
Ga0157140_1000003820F000957AGGAGMSSFRHLDGMVALLSEIYHINERIMCGDICSAKTAIQSDRMKKLLNHYHEALSEDGATKISLQAYAAAGGWVGITYSYEVDGFEIAGSQVPRRV*
Ga0157140_1000003824F014261N/AMKSLVTLAALLIFGWLAVVTFCGPELYRAINGPEPVKAKAVVRRVR*
Ga0157140_1000003826F003583N/AMAKPPARSASEANLTLAVLILTVVSGVTALSCALTSSFVLDQLHNTDALALIVVDGSSIKSDSADLERNLSWATMALKSVRDLGWALAVGCLGVGVAVFLRSRRQNAS*
Ga0157140_1000003828F042341AGGMSKPRPKSDPPAVKYAEPHFTFRILGKCKPSHAPGCRTPFGYCWKGYGDIHIDPRQPEHEMIDTVVHELIHDTYPFLDEDAVESGATRIAEALWRMGYRRTVIKP*
Ga0157140_1000003833F021297AGGMSCSNTVTVSRGNTFACTFTWTPGATGPADLLTTTLSSTFEDKMLNEYPMTVTKAVDGLSFTVAYSGDTSNWAIGTGRWDIKFVFPGSTVSRTELFRVNVIDSVTV*
Ga0157140_1000003839F001055N/AMGTKSIRHIVESVVSTYLSTQTGLTSVTFLTGDSAVIQTLPKAVILCDSARAPGDLPEGLGNYSCSVRITLFSNADDTTLADHRARCAALSGNMRDLTSIKAAFVSSGDATCYDVTIGSEDEGIDERSWATAFSFDVLVVLPAA*
Ga0157140_100000384F026860N/AMRPKDFLRLVKQQATYHADTLVERDIPAPKGWFTVDQIREELRMSHTRNASSRALDLYRRGLLERQPHQFKAKTGQCHMAYVYKPVPPYRTIAEAATRVFEHQEETVPKGWVRIVDVSVKVKLSDVSVRSRIARAGLKPRYFKTRRGIIGIHRNAYYLESAVMALFR*
Ga0157140_1000003846F007416N/AMAQGLFIGLTECELLDIKAKALAMITEGKTLMSYSDSGSSASKQFAMPPKEMLSEAMFALSRLDPETYGRRVTIISTDWQNRND*
Ga0157140_100000386F004790GAGGMNAETLLWAQKVGITPERLAFLLACPKYTRTGRHDKPAYIKAENPNHHLQKLGDCYWFRLRRRGTDIVENIASDLETARKRRDEMLAAFDAGKPIPYITVR*
Ga0157140_100000387F016960AGGAGMDYLGLDGDFFKEDFKVDNRDFLVHAGKFARRMDQDVFARHFANWCPVMKHHDQPSPETVVCSDWRYINELRVCQDILWEKGWKVRTIYVATAGVGPANDEELDSIAEIRASHLFDQEYIFKPNARNQIMTEGRNLARAWRL*
Ga0157140_100000388F001338N/AMTTNNDRPPLKSIEVSGTYKLKLIKPKFEKVKHNEDGTSSARLFFLDDQGNCLSKSYGSKYAKPLAMLVGKFAGKFTEEIRLDATPAEFMQYIEPACGKTCLLGVEAIPNGEWNGKPQFKYKLTFPKGSQKPVVQEAPPENPPF*
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