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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012348 Open in IMG/M |
| Scaffold ID | Ga0157140_10000040 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Coldwater Creek, Ontario, Canada - S44 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 27038 |
| Total Scaffold Genes | 40 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (77.50%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Coldwater, Ontario | |||||||
| Coordinates | Lat. (o) | 44.58751 | Long. (o) | -79.6655 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F049633 | Metagenome / Metatranscriptome | 146 | Y |
| F051131 | Metagenome / Metatranscriptome | 144 | N |
| F052593 | Metagenome / Metatranscriptome | 142 | Y |
| F073556 | Metagenome / Metatranscriptome | 120 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157140_100000401 | F051131 | AGGA | MNKTFIYSYKTFVSFATYEDVTLRDSRVFEANEDLTESEINDYLEQASQRILTQIRNTGWWREYQRKMAKIVDPNLLPAVNPDYILARTQEFIDLNVYFALFEYVYPSVADFGNPDSAEFAKIKFYKDSYNVLFDEVIESGDWYDFSENGTIDTADKMAAVVNRVRTR* |
| Ga0157140_100000402 | F049633 | GAG | MRTELLTYLTAQLTGTIKTSQELPWTEGNDALYLKNARRVYLDEPNTEQAEFLPTLGSCSINQRITTIRWYLSVDAKNRNADLDSAITILGSAKDITTITGVWQRQFDYTTTIENDRIIYEGEYRFTNLA* |
| Ga0157140_100000403 | F052593 | AGGA | MAFIFPAPGVADVETTLAIRVTGDVSGLLVPAMQDITINNATDVFTWTQLDEESKLQIPTTATNSIDLNIVLEQTSFFGTGTGTDVALKEGIFGLSKNKRQVEFTLYMGDTSAGGAGKTLTGVAYITGLAPSVSADAPVWVSPCTLTVTGNYTVA* |
| Ga0157140_100000404 | F073556 | GAG | MMIFDDKTDKEILRSIEGETAKALAEIRCAKADLEQAEVRMKFALATIHYLKKRFED* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |