Scaffold Ga0157140_10000099

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157140_10000099

Scaffold Ga0157140_10000099

Overview

Basic Information
Taxon OID	3300012348 Open in IMG/M
Scaffold ID	Ga0157140_10000099 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Coldwater Creek, Ontario, Canada - S44
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12573
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (41.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Coldwater, Ontario
Coordinates	Lat. (^o)	44.58751	Long. (^o)	-79.6655	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004727	Metagenome / Metatranscriptome	426	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157140_1000009921	F004727	GAG	MEEVVKQATHNYGKAAQVEITPESTMAYDHIYFGLQQLITHEQLSLLYDSGATYQQDLKKLREQVMYKVTEIVDQVIIDNEAKVG*

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