NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137387_10000237

Scaffold Ga0137387_10000237


Overview

Basic Information
Taxon OID3300012349 Open in IMG/M
Scaffold IDGa0137387_10000237 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22580
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (59.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005236Metagenome / Metatranscriptome407Y
F015713Metagenome252N
F030713Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0137387_1000023719F015713GAGVKFSWHDVAEDVEKHAHKLAEDIFALEPDVTEEVDLKALFERILAKEDWTDKLAARLERFMGFFHRPQKETDLPEDLKLLIPDMRDVERAYMDITSGYKDFIKAVWEAQHERQWRE*
Ga0137387_100002375F030713GAGMTEKKRLPPWEEAKLVFKMQEETRKRKLLEEDMQRRIGRAKRVGPNTSDELEENRKRLRALQERIEQEDYP*
Ga0137387_100002378F005236AGCAGMGFLSIMGKILIGLAVLVLPVAVSLILVFSETLTTIGVAISLGASIFVFFCGIYAGFLGIKYERLQQKFESFVNPLRIRPNAVNLIKAICPRDHERVVFVDVSPHRDDARPDGLDIFLGSCGHEVHREEIEVKQRVDSAN*
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