Scaffold Ga0137387

Basic Information
Taxon OID	3300012349 Open in IMG/M
Scaffold ID	Ga0137387_10046616 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012349 Open in IMG/M

Scaffold ID

Ga0137387_10046616 Open in IMG/M

Source Dataset Name

Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2874
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2874

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003391	Metagenome / Metatranscriptome	489	N
F005235	Metagenome / Metatranscriptome	407	Y
F007411	Metagenome / Metatranscriptome	351	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137387_100466161	F003391	N/A	WGTSQDKPTGNTKGVKKMRKIRKITRDKKGIDTILAALLMVVIVVVAAVMVYAWATGLLSALLVQNPVPKESMNVETGSYLSNNTVITLSVRNTGSVAIAFSSYYVKDSNGNQIAQTTWSTVSGYPASISPNGLGTVNIRIGNSCTGCTGSGFTAFQSGYSYTVTLVTTRNNQFTWNGQR
Ga0137387_100466163	F007411	N/A	MANLTMLIIVVSLSSLLFIWAISSFGAYQGGAGYWFSSRSVANQERMSVEGAYFYAPGNGLNYALIYVRNVGTIPFTIVSVYINSTLYNSPATFPALQVNVSQVAPICPSSNGICGPNGGGINLHFTQPTLGPGDTQTITIATQRGTVITTTWVS*
Ga0137387_100466164	F005235	N/A	MSVYRRLARSKKGMSTIFGGLFFVIIILMGFNVMLWGFIQYDAYNHVITSMSQRDQQAVSENLVPVNATYPNGGPLNIIVNNLGGSSVSIATIYIWNTNTTGTTQCRPTPCIFNPPPALGKYFTNGNIPAGSVNFVIHVQGFVKDSNSYRISLATTRGREFSLYFPWRFNSLIINGGGGNFVTNIGPLAVYFDTKSFNYTSGTQTTSQSAFCMPASTPVVLYIRLANTDPTYNVTLLSQTGLQAQAYGVNGFGQFAHAWILDPASVNPSTNFAYNYNTNPYLLQHAGANGPVPASFAIVKIGGGGPNSAGAVSFGNSNVSWITFIGFYYLYQGVVQGQTIPFMDFVTSSPNCIS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137387_10046616

Overview

Ecosystem & Geography

Associated Families

Sequences