NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157138_1000063

Scaffold Ga0157138_1000063


Overview

Basic Information
Taxon OID3300012352 Open in IMG/M
Scaffold IDGa0157138_1000063 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Baxter Creek, Ontario, Canada - S37
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29132
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (69.39%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameFraserville, Ontario
CoordinatesLat. (o)44.16961Long. (o)-78.4089Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002502Metagenome / Metatranscriptome553Y
F029107Metagenome / Metatranscriptome189Y
F080127Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0157138_100006326F029107AGGMATTHAIVTLSNSTATRLTPAGLHSGIDITVQNLHDSAYVYLGGSGVDAEDFGYRLAPGAAWSVELSGPSPLYAISATNGSTVAVLKTSLEAGN*
Ga0157138_10000633F002502GGAMNTLTVGSQFTTAKSKVSGVIQEVVANKNGSFRVRLDVNGSPRWSTVKADK*
Ga0157138_100006344F080127N/AMEYSRMYKDQTPLRSISKTTKEHKFFERFLNNDLEVLASELQDRYSLIEGSKIPGVTPVTPFELWKDSNSVSTMKWRQYNVFQFHIDGIYELYKSVADMIREACEYYEIDFDEQKFMIQGWFNINHSGNGKLNWHEHGGPGAPDFHGYYSVAAEPSSTHYIVFDNEVENINKNNRAIISEMGHPHAMGDWDWDGPRITVAYDVTPLATLQKAGHSAEQHWIPLR*
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