 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012352 Open in IMG/M |
| Scaffold ID | Ga0157138_1000291 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11208 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (69.23%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Fraserville, Ontario | |||||||
| Coordinates | Lat. (o) | 44.16961 | Long. (o) | -78.4089 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000324 | Metagenome / Metatranscriptome | 1299 | Y |
| F000934 | Metagenome / Metatranscriptome | 828 | Y |
| F001991 | Metagenome / Metatranscriptome | 607 | Y |
| F002085 | Metagenome / Metatranscriptome | 595 | Y |
| F002689 | Metagenome / Metatranscriptome | 536 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157138_100029111 | F002085 | GAG | MNIIAPVDGTNNIRYADFIRITTPSDTYLFTTAPSNMTIPDIDAAEFNAVGVLIRVGEAQRDIKSTANETTVTLTGIDTAMLGFVLGQQVKGSQIELWHGFFDTNGALITTGGVGGLYQFFNGYISSFSISEQWMEEVRMYVGTITVSASSIQLILQNRIAGRYTNNNSWQFYNAGDTSMNRVNFIETINYQFGKNAPNNS* |
| Ga0157138_100029112 | F000934 | GAG | MSLQNILAICESVGINDQRFVGQTVSRNQRIITSEILTVVPFAFDMKPMNYLYYSQNRGVLNSLRIADKALEQYLNFGQTGWLNYVKYQGEFTPLQISACEWQTSSANKTLVLGSLPTVSSSTYVVRVGDFVQVGRYSYIATADVQRGGASTVDIPVHRNLIDALASPVAAVIGEFGTTVSMGGDTYTGITFPVILREYPTYTLIPITNDSFIQWNGGFKAFESVL* |
| Ga0157138_10002912 | F002689 | GAGG | MATVNATDARLDTHEEVCAMRYEQINARLKRLEAIIIKAFGIMTVGMAGVIWSTMLPHMK |
| Ga0157138_10002915 | F001991 | GAGG | MAVFAKNTLTQVSGFDNPIIAGELVYNQKTFWNLTMATAGVPVDLTDATISAQIIRRQVSDLVDTRNGLSFNIADYTPEPDPVTLTIANRDDEAGLFTLVIDESSWDVISTDPELNIAANNPVAFSGRIKIGFPAAGTTPAQDSIIFLLFLVRSDGVVN* |
| Ga0157138_10002916 | F000324 | AGGCGG | MNGPLIPRFSVNQDGTTLNIYHANKGEGLPRHEHIYSHLTMCHAGSIAVRKEGKEVVRTKDSQPVNLVANEWHEIEALEDNTVFVNVFAEGKY* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |