Basic Information | |
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Taxon OID | 3300012352 Open in IMG/M |
Scaffold ID | Ga0157138_1000352 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10123 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (40.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Fraserville, Ontario | |||||||
Coordinates | Lat. (o) | 44.16961 | Long. (o) | -78.4089 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001298 | Metagenome / Metatranscriptome | 727 | Y |
F021297 | Metagenome / Metatranscriptome | 219 | Y |
F088512 | Metagenome | 109 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0157138_100035211 | F021297 | N/A | MSNTVTISQGNTFACSFVWTPGPSGPANLLTTTLTSTFEDKCGKQYPLTVTKALDGLSFTVSYAGDTADWSVGLGRWDIKFAFSSTSISRTEIFRVNVIDSVTA* |
Ga0157138_10003522 | F001298 | N/A | MSLYGKEFLDDAKEMVADYGVPGSTAGGTLTFQCLISDPAYTTSLEAGGYVERTQYSVRLPAVTASWSLPDGSIGASAATLSGGFPIPSLGIGKKLTVGGKVVRVNSQTHKPASAWITLVVMDADQ* |
Ga0157138_10003524 | F088512 | N/A | MGTISVRHICEGVLDAYLTANSGISGVAFYTGDNAEINVLPKAVILCDSARTPAELPEGLGNFHCSVRVTVFSNADDTTLTDHRARVAAIAGVMADIPAIKAAFVAGGDAACYDVTPESEDEGRDERSWASVLSYDVFVVVNPQP* |
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