Scaffold Ga0157138

Basic Information
Taxon OID	3300012352 Open in IMG/M
Scaffold ID	Ga0157138_1000381 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012352 Open in IMG/M

Scaffold ID

Ga0157138_1000381 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9666
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (63.64%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9666

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (63.64%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Fraserville, Ontario
Coordinates	Lat. (^o)	44.16961	Long. (^o)	-78.4089	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Fraserville, Ontario

Coordinates

Lat. (^o)

44.16961

Long. (^o)

-78.4089

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012670	Metagenome / Metatranscriptome	278	Y
F040590	Metagenome	161	Y
F099270	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157138_100038116	F001915	AGGA	MEWTLAHPLHDVDAIVDLADSMFGQEADGILTRDRNVFRKNVTLTATHQLFDKGKEFLAVCRGERFVSTMMGDSAVDALLAYCWFDRGGYTTYSNEEISNAKFHHVDLSLPAKQRVRLINEMIDQHILWAHSWGIPVICSTSIRAEHTAFMKIHKKRGFAVNGSYAWIKTAEAMKGLK*
Ga0157138_100038117	F012670	AGG	MKKPKDADILFGDIRPEGSLVTTPEELERKKRYMKMKRLEKRAMGLATGEQLPKDEKPKPTGRQKSIVNRVTEYGALFNKLNEERLAKGLPPLKTAMEVLIDAMQSEEIDIKDKARIADKLAPFESSRAPIISIEHVNNVNKEEEVSADDALDDFLTALRKV*
Ga0157138_100038118	F099270	AGG	MSTNFLYAQSPNRTGNISKHAPSKSGGVTNVTAAKHGTATPKGNQGAPKANGNAFPIGNKVSVSTHADYCGCIKNDGYMNKSTKNYLG*
Ga0157138_100038119	F040590	N/A	MSYGKVISGGKAMTNGLTKNINNKLKGFEDGHKRGQTLATAVGKAFNQNPLSGPHLNDINVAAAKKFTVPKLPKSV*
Ga0157138_100038120	F001059	AGG	MATYDIAALKEDLPTAKDLAQFVYDKTSIALDLVGKPKEEQYQVAKNALEGKKIPSDYQTDLNPYIDRKELIPVDEKRVLPPRDKDLPNEESQVHFFGATNMPHPLDPQSDKKVQINFRKYDNGVITYQVMGPLEQIAVGERINKFGQKQPEKYSWIDPRTEELVLRRADGTYTEKGRGLYAYCVGEKGGGIWSLIDRDMLNIVQKNVTNPWL*
Ga0157138_100038121	F006264	N/A	MEDPTTIFRQKLSAQAEVCARKTLEWLQKDLQGDRELAPEDVYYLASAADLLLTMRDLYGKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157138_1000381

Overview

Ecosystem & Geography

Associated Families

Sequences