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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012352 Open in IMG/M |
| Scaffold ID | Ga0157138_1000585 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7298 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Fraserville, Ontario | |||||||
| Coordinates | Lat. (o) | 44.16961 | Long. (o) | -78.4089 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015095 | Metagenome / Metatranscriptome | 257 | Y |
| F023592 | Metagenome / Metatranscriptome | 209 | Y |
| F027413 | Metagenome / Metatranscriptome | 194 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157138_10005852 | F023592 | AGG | MNSADILIAAFAAFIGFMFMVIGYSIGYRQGHGEGFIRGRAIAQALRDKELI* |
| Ga0157138_10005853 | F015095 | AGG | MEQAQLVIGVTLGISAILGLLAGLIRKTVKYYLSELKPDGNGGHNLAGRVERIEKRVDRIYELLLEDKLSK* |
| Ga0157138_10005857 | F027413 | N/A | MATGRDDIDLQCNAGYARMEILNTNSQAFDIDVTDALVLELKNSSGVYVPVFGGQVSDFGISVRSPEEYGFVTVGTVLAVGSLSKLTKALFPDALPKTEDGNQIYDILNELLINSWFEVAPSLQWSAYDPTTTWADAENVGLGEIDQPGLYEMISRSADPYSSYNLCAQIAQSALGQLYEDKEGRVCYADADHRTAYLSANGYKTISANYAIPTSVKSILQIGKIRNSLVFNYGNNYNSQATATDPDSIATYGRYQRSFSSNLHNLSDVNDVMDRELGLRAIPREQLQAISFRLDNADMPDTERNKIIDIFFGEPVIISDLPNNMFNGQFNGFVEGFAIRATPSYVDFTLTLSPTDFSLIAPQWATVSPGSLIWTGVNATLIWENAYGGLT* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |