NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137371_10417463

Scaffold Ga0137371_10417463


Overview

Basic Information
Taxon OID3300012356 Open in IMG/M
Scaffold IDGa0137371_10417463 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1040
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006905Metagenome / Metatranscriptome362Y
F045282Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0137371_104174631F045282GGAVTGIHADIDALKGLHQALVRYRHAQRDVIARGEDQLTATRASLEARVSRLRAQLELGQAEHTACQDRAAQADPDNAVDCSGYARAVEQNSQRLEQIRLWQQRIDAEASEFS
Ga0137371_104174633F006905N/AGAVWEAHREQLRAISNNMPSAAIEPAINALRAVLREVPEEFPDRNREVNCFLPPLASAIYAVMKKQGAEIPYHSRVEHIATGGVAKYPDIVRTSLDELAAEFDGICRRPGEPTT*
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