NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137384_10014470

Scaffold Ga0137384_10014470


Overview

Basic Information
Taxon OID3300012357 Open in IMG/M
Scaffold IDGa0137384_10014470 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6412
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002013Metagenome / Metatranscriptome604Y
F025365Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0137384_100144701F025365GAGGMPKKTKPKGMCDGDTPLTPITAKERRKLDKSIKKKYDRFRRRYPEVHGKVVDFITHSIEDGTLYFSVRFKDKTDFSLRYACDMFVVGADFCDFKTGDFEMIREYMRPIPR*
Ga0137384_100144702F002013AGGAMEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLERRRAIINLQFMLEMRKLEEDDESRFEEEFNLWLSDEPLTNDEICQLMRGVERERKLEGKPPLVQFLPRSKRAKKTPQKTERAHSSRKVNGSPTPASGVKSAEPEDAHA*
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