NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137384_10805826

Scaffold Ga0137384_10805826


Overview

Basic Information
Taxon OID3300012357 Open in IMG/M
Scaffold IDGa0137384_10805826 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)759
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005262Metagenome / Metatranscriptome406Y
F104886Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0137384_108058261F104886AGGMIPHGGENLRGEPQDFRIPRTGDRDLAFRGWLLSHAEERGGSPGATRGVDIDIYLTIRLRLAAHVCRWSLQEGEGLREEHRVAAHDSA
Ga0137384_108058262F005262GAGGMRALLALLLTAFTLATASPLAAQTAPSHVYWVGFYQALPGKAAAYNKALTDIADPVLDELVRRKLMVSHVQLAQYTGAGENTNLVILEFPNWAALDTYEAKLDEASQAVLHKSWREATAGFAELRRLVRIEIYRPS*
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