NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137375_10125353

Scaffold Ga0137375_10125353


Overview

Basic Information
Taxon OID3300012360 Open in IMG/M
Scaffold IDGa0137375_10125353 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2558
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010906Metagenome297N
F105712Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0137375_101253532F010906N/AVGRVTIGVREIFVSQQEDLSNLRNLVGAENVLAECAGENYTVYVTDSRLLVGKRFSAGEKYVNVPHAEVSTLELITKSLIPPLTYTVLGAIAVFLVWWFPGQGRLSLPQAPFDLLLIGTFAVFLAAVLATWWRRRVAVLRIGISGTKEPITVRLVPASKAENVFKALKG*
Ga0137375_101253534F105712AGGMVVITGALIILPAYINYESWHRLNLDITVSMSISLTSFALGILIFILVVGKERIEGTKKP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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