NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137390_10319312

Scaffold Ga0137390_10319312


Overview

Basic Information
Taxon OID3300012363 Open in IMG/M
Scaffold IDGa0137390_10319312 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1535
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000528Metagenome / Metatranscriptome1047Y
F050281Metagenome145Y
F091706Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0137390_103193121F050281GGAMIYQRQFSSDQNKNFVRAKNALGRLRANPTDAVAVMALYEACSRELQEVAVRYFGKNQLGKKAVLNLLVAVVSRAWTYDPQSINGSEWVSRVADAEAR
Ga0137390_103193122F000528N/AMGEWKAQISVRVRQALRSELEEFAAREKRKLGNLGEVILEWAFEQLKVAGSTERLLKYKIRLPDTALRGRKLQK*
Ga0137390_103193123F091706GGAVAICAEIYLCHRNVDRLIRVLQRMETFSIRPRQEMKAYEVRAEEIRAALNVDFSAAMATLERDDHSRFKRQRTAWENTSRKPNRK*
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