NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134047_1048571

Scaffold Ga0134047_1048571


Overview

Basic Information
Taxon OID3300012380 Open in IMG/M
Scaffold IDGa0134047_1048571 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_2 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1394
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068537Metagenome / Metatranscriptome124Y
F085292Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0134047_10485711F068537AGGAGMKNTYPTLAVLSIFLLFAGLILAQQPALAQAREKTQIIEGELTKVDVTAKTLSVKTSEGQEMVLRYNDETQISGAEGGVEGLATMNGTTVRVHFDAVNKTASKIEVGERQK*
Ga0134047_10485712F085292AGGAGGMSTQKQVSILGIVALLILALTGCSKTREQSSAETQSPVTQSEQAKVAQAQETPQIVAGELTKVDATSKTLSVKSSEGLEMEFRYKDQTQISGVEGRLEGLATKSGTPVSVHYDTASKMATQIEVRPRQQ*
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