NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134026_1214486

Scaffold Ga0134026_1214486


Overview

Basic Information
Taxon OID3300012381 Open in IMG/M
Scaffold IDGa0134026_1214486 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_24_1 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1199
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009387Metagenome / Metatranscriptome318N
F032216Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0134026_12144861F009387N/AAYDVSGEDIEEFIETGIASRPLIQQLLKSVVVVVLVDCSKMTTEIDTPAYKKMLRYDSTVAKLLVAFQTYKKQEYDRLKDSGVKADAPRIYPAFVLSKFDTLRDDVLARLGLHRGFPENKRARKDYAEALLRVFVPQTLSQIRGGKIAGVSMDKAAYFLSWVRTEQHEGMEPVGQPRIVRTGFAPEGGGEPDFSYDEYVEFIEHFRDIAHKIPDEVLEAERFQAQALARPA*
Ga0134026_12144862F032216AGTAGGMGSAESSHGSTDKEFVEFDHWLYGAVLGTGYTQKAVSKGLDAGLYDQYLRGHYTPIRAATAQSYEDPIDLQMIHPVRGNREVLLSRITRGPPDEAGRPTFANHTVVGRIEPLKTGAITLESIYRALGEFDRRDPDVAGEMPLLRVPVRSEAQRQLPFGTGIHR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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