NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134043_1030997

Scaffold Ga0134043_1030997


Overview

Basic Information
Taxon OID3300012392 Open in IMG/M
Scaffold IDGa0134043_1030997 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_1 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1112
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007411Metagenome / Metatranscriptome351N
F025252Metagenome / Metatranscriptome202N

Sequences

Protein IDFamilyRBSSequence
Ga0134043_10309971F007411N/ASSFGAYQGGAGYWFSSRSVANQERMSVEGAYFYQNGGLNYALVYVRNVGTIPFTIVSVYINSTLYNSPATFPALQVNVSQVAPICPPGGICGPNGGILRFGQSAPGSGDTQTITIATQRGTVITTTWVS*
Ga0134043_10309972F025252N/AMSVYRRLARSKKGMSTIFGGLFFVIIILMGFNVMLWGFIQYDAYNHVITSMSQRDQQAVSENLVPVNATYPTGGPLSIIVNNLGGSSVSIAAIYIWNTNTTGQCRPTPCIFNPSPQQVTYFTNGNIPAGAVNFVIHVQGINVQGGNSYRITLATTRGREFNLYYPWRFSSLIINGGGGNFVTNIGPLAVYFDTKSFNYTSGTQTTSQSAFCMPASTPVVLYIRLANTDPTYNVTLLSQTG
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