NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134024_1360041

Scaffold Ga0134024_1360041


Overview

Basic Information
Taxon OID3300012404 Open in IMG/M
Scaffold IDGa0134024_1360041 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_8_1 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)980
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_55_15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010988Metagenome / Metatranscriptome296Y

Sequences

Protein IDFamilyRBSSequence
Ga0134024_13600412F010988N/ASLYVKGLVLLDLGNPHLIRLGFPKAPGHKATLSVVPQNGSRRTIAIKGNGLVEAQGIVFPEPKIFVPELVRMKEFYGEGVKSRVDKCPSVISIPSNAIRSISTSEVSKARYTFVRADNGEEVNSFRPRQIAETIKIDLSSAGVLKLDDGKVNIPLGTARELRAEYVQEKVDPGSDPYADHFNHYFSYIDRPAALDFDVVPKRITGATAPTPKAGDHFMMLDAFAVCYIAAVP*
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