NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0153880_1102774

Scaffold Ga0153880_1102774


Overview

Basic Information
Taxon OID3300012411 Open in IMG/M
Scaffold IDGa0153880_1102774 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Alinen Mustaj?rvi, Finland - AM7a metatranscriptome (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1118
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameFinland: Tavastia Proper, H?meenlinna, Lake Alinen Mustaj?rvi
CoordinatesLat. (o)61.2Long. (o)25.1Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029445Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0153880_11027741F029445GAGMLKNKSKNSRRGPKVPRPFSIEKAGDQVVKRMTFPSVLTTGAGTSIAVTGFSTAQVQSAPATEWASFAARYQQYRVRAIRVTGKAALPIQSATAAHGLLYRADYIGGAGPATPAQTLSDEGVRIVATHSDFRDTVTWKGNSNARLWNPTSAAIPLANTFNWVCASAVLPVLTTGTTYYALVIEWEVEFRGSQ*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.