NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153880_1131010

Scaffold Ga0153880_1131010


Overview

Basic Information
Taxon OID3300012411 Open in IMG/M
Scaffold IDGa0153880_1131010 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Alinen Mustaj?rvi, Finland - AM7a metatranscriptome (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)660
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameFinland: Tavastia Proper, H?meenlinna, Lake Alinen Mustaj?rvi
CoordinatesLat. (o)61.2Long. (o)25.1Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097175Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0153880_11310101F097175GGAMKTYHILIGNCEEVFNDFVEALFQEVCEGKAKVQCTRTARVGDFVRQGCEHDFDLVIQVPHSLFPEVSAPTPIGLIGEAIRAISTIKSKRQAPVITIVAPEERGRYEPLLLEAGADCVLELPFAGEELSAAVGRLLKLPARLERRASTRWYNAGVLMRGLQRLTQA*
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