Scaffold Ga0153880_1313970

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153880_1313970

Scaffold Ga0153880_1313970

Overview

Basic Information
Taxon OID	3300012411 Open in IMG/M
Scaffold ID	Ga0153880_1313970 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Alinen Mustaj?rvi, Finland - AM7a metatranscriptome (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	598
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Finland: Tavastia Proper, H?meenlinna, Lake Alinen Mustaj?rvi
Coordinates	Lat. (^o)	61.2	Long. (^o)	25.1	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037489	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153880_13139702	F037489	AGTAG	VDEQAQVAGVQRRRSRAEAGQLVAEYEASGLSCVEFCRKQGLSLATLARYRKRPAQDSPAPGNRWVAVELSAGRPALWGGANSGLAVALPGGLRIEVGRGFDASTLAQLLSVLE

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