NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138266_1057247

Scaffold Ga0138266_1057247


Overview

Basic Information
Taxon OID3300012412 Open in IMG/M
Scaffold IDGa0138266_1057247 Open in IMG/M
Source Dataset NameMetatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 192hr light incubation - RNA24.B_192.20151118 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)855
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya → unclassified Amoebophrya → Amoebophrya sp. A25(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine → Polar Marine Prokaryotic And Eukaryotic Communities From Antarctica During Spring Seasonal Transition

Source Dataset Sampling Location
Location NameAntarctica
CoordinatesLat. (o)-64.775Long. (o)-64.053Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006021Metatranscriptome383Y

Sequences

Protein IDFamilyRBSSequence
Ga0138266_10572471F006021N/AVTLVLSGTAVKGEVEGEMVYKVDNKALGTVLSIGRYLIMFCIYVGFTCVIYSVFTIQHPKGEQFTPPISVTMQCVINLTFQFFFIYLMIWVCVTIDEFTGMKWQLLINTMENLKGTVAFCPMLAILFVGTRMRALLITNNKGAPQGWVQDGMYMATWAVLIQFLFGLLVPLCTGTATPCDEDGSPEYKPANPIALYCVLALKWGTFIFLYGGVITVITGVYTMTPETANGRGSVPLVGDYVGEPVGVNDIPTR*
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