NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138259_1775027

Scaffold Ga0138259_1775027


Overview

Basic Information
Taxon OID3300012416 Open in IMG/M
Scaffold IDGa0138259_1775027 Open in IMG/M
Source Dataset NameMetatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 24hr light incubation - RNA9.A_24.20151111 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1126
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine → Polar Marine Prokaryotic And Eukaryotic Communities From Antarctica During Spring Seasonal Transition

Source Dataset Sampling Location
Location NameAntarctica
CoordinatesLat. (o)-64.775Long. (o)-64.053Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006021Metatranscriptome383Y

Sequences

Protein IDFamilyRBSSequence
Ga0138259_17750271F006021N/AMVQVARTFSQFTGAKMSKFENAMLTAAKAMNFAPMLAILFIGARMRALQMDPVHGHPQRWAQNCFYMCTYAVLAQTLISIMIPLVLQGGVQKGKTEGDMVYDVENKALGAILSVVRYIIMICIYVGFSCVIYSVFTLEHPKGAEYTPPISVTMQCVINLTFQFFFIYLMIWICTSIDEFTGHSFPLLKNTMENALGTVAYCPMLAILFVACRMRALRITNNRGAPQGYAQDGMYMATWAVLIQFLMCLIVPCCTGHTDHKCDEDGNLVFEPENKIALYCVLTLKWITYIFLYGGVIAVIIGLYTMTPETANGRGAVPLVGDGKVPGVDAKVPGYDGVQEPVGVNDAPGVNF*
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