Scaffold Ga0150984_121484115

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0150984_121484115

Scaffold Ga0150984_121484115

Overview

Basic Information
Taxon OID	3300012469 Open in IMG/M
Scaffold ID	Ga0150984_121484115 Open in IMG/M
Source Dataset Name	Combined assembly of Soil carbon rhizosphere
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	867
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa, For Root-Enhanced Decomposition Of Organic Matter Studies

Source Dataset Sampling Location
Location Name	Hopland, California, USA
Coordinates	Lat. (^o)	38.97364	Long. (^o)	-123.117453	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046467	Metagenome / Metatranscriptome	151	N
F065927	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0150984_1214841151	F065927	AGGAG	MDPNRHPPLKSIETPSVRSFQALDHFVTAGGMRVTYYALALDKVPVDFFADPDGAWSYDLLARAAGFASHSGVAVGALKADFNGHPEGAAVVTLNALTRPYVAIVECPIAYEYSEPTEDSASSAA*
Ga0150984_1214841152	F046467	N/A	VSDLRDPDRDPDHLLAPARLIELENAAEPARKRLAELAPEALELVQAWLSAELSVARERALEVADFEFAECVCELEQRLRFPGSFMRDAQASLRIQSVFGARAQFRLIQGGG*

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