NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157355_1003163

Scaffold Ga0157355_1003163


Overview

Basic Information
Taxon OID3300012493 Open in IMG/M
Scaffold IDGa0157355_1003163 Open in IMG/M
Source Dataset NameUnplanted soil (control) microbial communities from North Carolina - M.Soil.10.yng.090610
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)982
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9076Long. (o)-79.0506Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008701Metagenome / Metatranscriptome329Y
F030220Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0157355_10031632F008701N/AMVFGVRSGLRHPRRLTVGAIASEAWFAVFYALRVPRAVQRRRPRMAAGWALVAAGSVARLRAASAEPLR*
Ga0157355_10031633F030220N/ARLGDNAGMARDDSGERLLGRLVFMSLLDGLRPSGIPQWLSPVAPVVTQAAVGAGHWAAGRRQRAVAAWVSAAGFGLVAWGLGTEAPTRAEWQQ*

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