NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157334_1042114

Scaffold Ga0157334_1042114


Overview

Basic Information
Taxon OID3300012509 Open in IMG/M
Scaffold IDGa0157334_1042114 Open in IMG/M
Source Dataset NameUnplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)600
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9076Long. (o)-79.0506Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005958Metagenome / Metatranscriptome385Y
F044637Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0157334_10421141F005958GAGMADNAGDPNQQLAAAWQAATAALGEWRQQVSAATSDAMNKLDPAIRAAVEAGRSALSGDWRACRCQCGSAHPDDRGVCDGRAVLTRRVGQADVRMC
Ga0157334_10421142F044637GGAGGMGDFEEVERLQAGIRTWLLRTARSGRHELRGISAPAVLPMLCAAAFGPALADADG

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