Scaffold Ga0157352_1009308

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157352_1009308

Scaffold Ga0157352_1009308

Overview

Basic Information
Taxon OID	3300012519 Open in IMG/M
Scaffold ID	Ga0157352_1009308 Open in IMG/M
Source Dataset Name	Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1003
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	35.9076	Long. (^o)	-79.0506	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001384	Metagenome / Metatranscriptome	709	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157352_10093081	F001384	AGGAGG	MADIRGVGKKITYSEDNPISAEIEALRKSRDNIKRPPKDDEERERLARWLAHRGRDELEVTVGTACYAMAHFEMDCEWRYFLAEHAGTEAGHGWGYIRHANAIDPSRDHSKPDPEFERKYGLTPRIEHHQIMKRDFLSYIFSGNLWPYGHVTAASIQSIQITTPKLLDFEERVVHAEERSHHDAILQKLHDYVWEQIEIWGEAPIRRRIGEIEKQALNSRPRTVF

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