NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157352_1109156

Scaffold Ga0157352_1109156


Overview

Basic Information
Taxon OID3300012519 Open in IMG/M
Scaffold IDGa0157352_1109156 Open in IMG/M
Source Dataset NameUnplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)501
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9076Long. (o)-79.0506Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100895Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0157352_11091561F100895N/AGFLKPMFSALQRRALRTGIVFGSVFMIGLLVISWQIYRLIPTHTLNEVLSVNGVTSALVIAFLWIGVAFTATAMAALIFVRQHVSGPAAELARTHEAIAKGDLSSIYNPSVSNRVVDRLTRSTMSMVSELRGVTGKMHSSADENSKLAAQLVKATVSAAATARETA
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