NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129353_1577266

Scaffold Ga0129353_1577266


Overview

Basic Information
Taxon OID3300012525 Open in IMG/M
Scaffold IDGa0129353_1577266 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA2 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)885
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.0306Long. (o)-76.0464Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007722Metagenome / Metatranscriptome346Y
F013311Metagenome / Metatranscriptome272Y

Sequences

Protein IDFamilyRBSSequence
Ga0129353_15772661F007722N/ANSVKGLDWDTIACLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAIKQQNNVTDIRKNNIGG*
Ga0129353_15772662F013311AGGAGGLAFLGDFGKFFGLGSSEEVLGDVGTAVGSLFGPQGAIIGQQTGKAVGRATSSLARDDNISPVSTADQALEQSAVAVSTKGDVPQETSTMLGTTGMPVQTAGFGMIPQAIQGLRGIAPQIGKFFGSPAGAVAIGGGTGIATQFLSGSDMRRAKPVLTQSRRNKARVRQLVNFMGIEGAAQFLSQASGQNVMPGDVVQLLLRTFRNDGAYITKAQVRNLRRTTNRFKSLE
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