NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138256_10189672

Scaffold Ga0138256_10189672


Overview

Basic Information
Taxon OID3300012533 Open in IMG/M
Scaffold IDGa0138256_10189672 Open in IMG/M
Source Dataset NameActive sludge microbial communities from wastewater in Klosterneuburg, Austria - KNB2014incub_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1846
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Active Sludge → Active Sludge And Wastewater Microbial Communities From Klosterneuburg, Austria

Source Dataset Sampling Location
Location NameAustria: Klosterneuburg
CoordinatesLat. (o)48.3Long. (o)16.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011936Metagenome / Metatranscriptome285Y
F032247Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0138256_101896722F011936N/AMLSRDYSRLNDAIVKISDSLSALVIIQEQNKTIMQCMEHQSQTIEKLDARIDAIELQMPQLIESRQWLMVGLGFIVSAVIVSLIAMVIKT*
Ga0138256_101896725F032247GGAVAAMTPSEAIHNLETYGRHMGNRFIAINHDKSVELLLKNAVIVLDDAGMIERYTVKAWAHCNVRIINRKAEKVDYTTGL*

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