NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138256_10807346

Scaffold Ga0138256_10807346


Overview

Basic Information
Taxon OID3300012533 Open in IMG/M
Scaffold IDGa0138256_10807346 Open in IMG/M
Source Dataset NameActive sludge microbial communities from wastewater in Klosterneuburg, Austria - KNB2014incub_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)722
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Active Sludge → Active Sludge And Wastewater Microbial Communities From Klosterneuburg, Austria

Source Dataset Sampling Location
Location NameAustria: Klosterneuburg
CoordinatesLat. (o)48.3Long. (o)16.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087089Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0138256_108073461F087089N/ALKDPSAVIDTFIASKSRLADSQFIVKMAQDSPQFKTSLRGALAEKVAGLNNAKTIEFIENKANRELIKGIFGDTVLKKFDRVLVDAKRDRLGSTLGGVGGSQTYGRGATDKIMSQSIWKLDGAGASLGALLGTMLGGVGTMGGALGGAATAHTVKVLNMKQNALTSKAMLDPKYAAELLKKQIAPTQYKRGALESLKKNIAPSTIPAQDKNQ*
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